ECCB 2010 NEXT-GEN SEQUENCING TUTORIAL PDF

ECCB 2010 NEXT-GEN SEQUENCING TUTORIAL PDF

Visualizing the next generation of sequencing data with GenomeView .. .. A .. Why inverse proteins are relatively abundant, J.-C. Nebel and C. Walawage, Protein & Peptide Letters, 17(7), Michal Nánási ([email protected] ) Website: (free download, tutorials, manual, . Next generation sequencing presents new challenges in large scale data at the European Conference of Computational Biology (ECCB) , Ghent. Tutorials, workshops and seminars To do bioinformatics well, you need to learn 3 things. ECCB Next-gen sequencing Tutorial (Thomas [email protected]).

Author: Brajar Mizil
Country: Kuwait
Language: English (Spanish)
Genre: Personal Growth
Published (Last): 23 July 2005
Pages: 42
PDF File Size: 1.92 Mb
ePub File Size: 3.4 Mb
ISBN: 606-4-75179-394-9
Downloads: 9477
Price: Free* [*Free Regsitration Required]
Uploader: Doutilar

Presenters

We also thank, as our further supporting sponsors, Gemeentemuseum Den Haag, where also the opening reception will be held, the Municipality of The Hague, Bayer sponsoring the morning run and The Utrecht Bioinformatics Centre sponsoring the Poster Award. We also gratefully acknowledge the hard and diligent work performed by the reviewers over a short period of time.

All original research papers that had been published in peer-review journals between 1 March,and the submission deadline of 29 Marchwere eligible to be presented as a Highlight talk.

Submissions to this track should cross the boundaries of traditional academic science, or show developments that are directly relevant beyond academia or have potential for it.

We thank all theme co-chairs for their availability throughout the reviewing process, for their very positive attitude in the final selection and for their valuable help in re-examining the modified submissions. The review form explicitly differentiated between impact and suitability for ECCB on the one hand, and scientific quality and reproducibility on the other. Overview of variation calling from next-generation sequence data SNP calling theory and tools Short indel calling theory and tools Practical examples of variation calling File formats for variation calling and storage.

It coordinates, sequencin and sustains bioinformatics resources across its member states, enabling users in academia and industry to access vital data, tools, standards, compute and training services for research. We thank all those who provided financial support to the conference.

On the scientific side, the Proceedings Track presents novel scientific contributions, while the Highlights Track showcases already published high-impact science in computational biology. He subsequently moved to the Pathogen Genomics group at the Wellcome Trust Sanger Institute to work on sequence assembly of several pathogens such as Plasmodium falciparum strains, Trypanosoma brucei, and several other yutorial genomes.

As data integration is a ecdb for systems biology and translational research, the Semantic Web can bring relevant benefits in these areas. The ECCB conferences are gathering about a thousand scientists and industry staff working at the intersection of a broad range of disciplines including computer science, mathematics, biology and medicine.

  COME POSSO SCANNERIZZARE UN DOCUMENTO IN PDF

To present a more unified view of where the science has gone over recent years, new to ECCB this year is that the conference presentations are divided over five broad themes: Sponsored Talks enable sponsors to showcase their innovations nexh-gen computational biology and to highlight their scientific value.

BioinformaticsVolume 32, Issue 17, 1 SeptemberPages i—i, https: All poster abstracts are available on the conference web site. Introduction to short read alignment algorithms and tools Practical instructions and examples on use of short read aligners Parallelising short read alignment Introduction to sequence assembly methods and tools Practical instructions on use of short read assembly tools to get the optimal sequence assembly.

Next generation sequencing | Taverna

Today’s software and CPU time availability on clusters, super computers, and the grid allow for easy improvement of old files. Working with next-generation sequencing data Tutorial 2: In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies.

Taken together, the workshops demonstrate how extensively technologies have found their way into large-scale practical applications: The Applications Track features 11 presentations, which were selected out of 31 submissions. The ECCB organizing committee congratulates all these dynamic young scientists for their enthusiasm, which is essential to the future of research in computational biology.

Learning resources | BacPathGenomics

Following the call for Proceedings papers, we received submissions. The aim of this tutorial is to briefly introduce the key basic principles needed to understand what it means to represent information on the Semantic Web, and then to provide the attendees with basic hands on competences to start using biomedical information resources which are now available on this framework. In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies.

These technologies have resulted in a next-en reduction in the cost of sequencing and has meant that many new researchers now have access to raw sequencing data.

Working with next-generation sequencing data – A short primer on QC, alignment, and variation analysis of next-generation sequencing data Presenters Thomas Keane completed his PhD degree in the area of distributed computing and high-throughput phylogenomics from NUI Maynooth Ireland in Recent data obtained by high-throughput experiments accelerate the genome-wide identification of regulatory elements but also provide additional bioinformatics challenges. Within each theme, the theme co-chairs assigned papers to expert ecb, taking care to avoid any conflict of zequencing.

New challenges are now emerging in these fields with the recent advances in low-cost ultra-fast sequencing, bio-imaging and big data.

We are grateful to the ECCB steering committee for their support and contribution to the organization of the conference. Gkoutos University of Birmingham, UK.

  ISABEL ORJALES VILLAR PDF

His current work includes downstream analysis of next-generation sequencing data in order to identify putative SNPs and indels. They will be presenting the latest scientific literature in the field of computational biology, bioinformatics, data stewardship, modeling and simulation, as well as new hardware, software and technology developments.

Next generation sequencing

In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to sequencinb some basic quality checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, short indels, and structural variants from a reference sequence. Use of semantic web resources in computational biology and bioinformatics Tutorial 3: Motivation In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies.

This year four different tracks were created for ECCB: Close mobile search navigation Article navigation. Many people contributed to the local organization of the conference, often much beyond the call of duty, and we owe them a great debt, in particular Femke Francissen and Jacintha van Beemen, both at the Dutch Techcentre for Life Next-ven DTL for their relentless logistic next-gej organizational support.

The type and volume of the data produced by next-generation sequencing machines presents many previously unseen informatics challenges. The Semantic Web is a set of technologies, or a framework, which is designed to make data integration possible via the web, with the addition of a precise semantic characterization of entities and relations ontologies. The purpose of the ECCB tutorial program is to provide participants with lectures and hands-on training, covering topics relevant to the field of bioinformatics.

Citing articles via Web of Science 1. Introduction next-fen structural variation Summary of different types of structural variants Large insertions, deletions, inversions, translocations, copy number variants Overview of algorithms and tools for calling structural variants Practical examples of calling structural variants Visualisation of structural variants. We believe that for all of the rejected submissions, the reviewers provided high-quality reports.

Consequently, submissions relating to sequending research were deemed out of scope.

First of all, we are indebted to the program committee composed of the theme co- chairs and reviewers for their crucial and dedicated work. As a consequence, databases and software are evolving rapidly, and new algorithms are required to improve computational analyses of massive biological or biomedical datasets.